ModuleGraph - Overview

Description

ModuleGraph facilitates the identification, visualization, and investigation of functional modules and their interplay in molecular interaction networks. For example, protein complexes form modules in protein networks.
The modules are represented as extra nodes within the network. Additional edges in the network indicate the composition of modules and their overlap.

ModuleGraph is implemented as a Java plugin for Cytoscape, a software platform for the analysis and visualization of molecular interaction networks.

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Release Info

ModuleGraph v1.1b:

Any string-type node attribute can be used as element identifier.
The currently loaded and the stored module data can be cleared (i.e. deleted).

System Requirements

ModuleGraph requires Java SE 1.6 and has been tested with Cytoscape 2.8.

Contributors

Tim Kacprowski, Dorothea Emig, Mario Albrecht